LOC101161932 protein (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC101161932

Ataxin 3. (295 aa)

Predicted Functional Partners:

prkn

0.969

vcp

0.962

spata5l1

0.942

ubc

0.942

rps27a

0.922

RAD23B

0.864

rad23a

0.864

stub1

0.803

uba52

0.769

H2M970_ORYLA

0.769

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H2M970_ORYLA	LOC101161932	ENSORLP00000015051	ENSORLP00000020060	Ubiquitin-like domain-containing protein.	Ataxin 3.	0.769
H2M970_ORYLA	RAD23B	ENSORLP00000015051	ENSORLP00000007067	Ubiquitin-like domain-containing protein.	RAD23 homolog B, nucleotide excision repair protein.	0.909
H2M970_ORYLA	prkn	ENSORLP00000015051	ENSORLP00000045716	Ubiquitin-like domain-containing protein.	E3 ubiquitin-protein ligase parkin; Functions within a multiprotein E3 ubiquitin ligase complex, catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins; Belongs to the RBR family. Parkin subfamily.	0.934
H2M970_ORYLA	rad23a	ENSORLP00000015051	ENSORLP00000031881	Ubiquitin-like domain-containing protein.	RAD23 homolog A, nucleotide excision repair protein a.	0.909
H2M970_ORYLA	rps27a	ENSORLP00000015051	ENSORLP00000038189	Ubiquitin-like domain-containing protein.	Ribosomal protein S27a.	0.992
H2M970_ORYLA	spata5l1	ENSORLP00000015051	ENSORLP00000003033	Ubiquitin-like domain-containing protein.	Spermatogenesis associated 5-like 1.	0.833
H2M970_ORYLA	stub1	ENSORLP00000015051	ENSORLP00000043284	Ubiquitin-like domain-containing protein.	STIP1 homology and U-Box containing protein 1.	0.622
H2M970_ORYLA	uba52	ENSORLP00000015051	ENSORLP00000010731	Ubiquitin-like domain-containing protein.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.552
H2M970_ORYLA	ubc	ENSORLP00000015051	ENSORLP00000015065	Ubiquitin-like domain-containing protein.	Ubiquitin B.	0.960
H2M970_ORYLA	vcp	ENSORLP00000015051	ENSORLP00000010644	Ubiquitin-like domain-containing protein.	Valosin containing protein; Belongs to the AAA ATPase family.	0.833
LOC101161932	H2M970_ORYLA	ENSORLP00000020060	ENSORLP00000015051	Ataxin 3.	Ubiquitin-like domain-containing protein.	0.769
LOC101161932	RAD23B	ENSORLP00000020060	ENSORLP00000007067	Ataxin 3.	RAD23 homolog B, nucleotide excision repair protein.	0.864
LOC101161932	prkn	ENSORLP00000020060	ENSORLP00000045716	Ataxin 3.	E3 ubiquitin-protein ligase parkin; Functions within a multiprotein E3 ubiquitin ligase complex, catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins; Belongs to the RBR family. Parkin subfamily.	0.969
LOC101161932	rad23a	ENSORLP00000020060	ENSORLP00000031881	Ataxin 3.	RAD23 homolog A, nucleotide excision repair protein a.	0.864
LOC101161932	rps27a	ENSORLP00000020060	ENSORLP00000038189	Ataxin 3.	Ribosomal protein S27a.	0.922
LOC101161932	spata5l1	ENSORLP00000020060	ENSORLP00000003033	Ataxin 3.	Spermatogenesis associated 5-like 1.	0.942
LOC101161932	stub1	ENSORLP00000020060	ENSORLP00000043284	Ataxin 3.	STIP1 homology and U-Box containing protein 1.	0.803
LOC101161932	uba52	ENSORLP00000020060	ENSORLP00000010731	Ataxin 3.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.769
LOC101161932	ubc	ENSORLP00000020060	ENSORLP00000015065	Ataxin 3.	Ubiquitin B.	0.942
LOC101161932	vcp	ENSORLP00000020060	ENSORLP00000010644	Ataxin 3.	Valosin containing protein; Belongs to the AAA ATPase family.	0.962