STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101163864CLOCK-interacting pacemaker a. (358 aa)    
Predicted Functional Partners:
bhlhe41
BHLH protein DEC2.
    
 
 0.680
LOC101165450
Clock circadian regulator b.
    
 
 0.678
LOC101172421
Circadian associated repressor of transcription a.
      
 0.677
LOC101163688
D site albumin promoter binding protein b.
      
 0.677
LOC101172430
Neuronal PAS domain protein 2.
    
 
 0.600
CLOCK
Clock circadian regulator a.
    
 
 0.600
kiz
Kizuna centrosomal protein.
  
 
   0.475
LOC101156967
Uncharacterized protein.
  
     0.464
LOC101155176
Uncharacterized protein.
  
  
  0.443
ENSORLP00000043490
Uncharacterized protein.
  
 
   0.422
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
Server load: low (16%) [HD]