STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H2MNX4_ORYLAZgc:163014. (317 aa)    
Predicted Functional Partners:
scp2
Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.
   
 0.694
LOC101172485
Sterol carrier protein 2b.
   
 0.694
katnal2
Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.
   
 0.648
acox1
Acyl-coenzyme A oxidase; Belongs to the acyl-CoA oxidase family.
   
 0.638
NSF
N-ethylmaleimide sensitive factor, vesicle fusing ATPase.
   
 0.632
LOC101174468
N-ethylmaleimide-sensitive factor b.
   
 0.632
LOC101175659
ATPase family AAA domain containing 1a; Belongs to the AAA ATPase family.
   
 0.621
atad1
AAA domain-containing protein; Belongs to the AAA ATPase family.
   
 0.621
pex6
Peroxisomal biogenesis factor 6.
   
 0.618
vamp4
Vesicle-associated membrane protein 4.
     
 0.616
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.