STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
abcc8ATP-binding cassette, sub-family C (CFTR/MRP), member 8. (1565 aa)    
Predicted Functional Partners:
Kcnj11
Potassium inwardly-rectifying channel, subfamily J, member 11.
   
 0.952
kcnj8
Potassium inwardly-rectifying channel, subfamily J, member 8.
 
 
 0.926
abcd4
ATP-binding cassette, sub-family D (ALD), member 4.
   
  
0.673
LOC101167824
Zgc:171558.
    
 0.662
ENSORLP00000030507
Rap guanine nucleotide exchange factor (GEF) 4.
    
 0.662
LOC101173088
Cytochrome b5 reductase 4.
   
 
 0.641
LOC101158525
Rap guanine nucleotide exchange factor (GEF) 3.
    
 0.636
C2CD4C
C2 calcium dependent domain containing 4C.
   
 0.615
LOC101160728
Potassium inwardly-rectifying channel, subfamily J, member 11, like.
 
 
 0.593
alpk3
Uncharacterized protein.
      
 0.582
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.