STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ankzf1Ankyrin repeat and zinc finger peptidyl tRNA hydrolase 1. (721 aa)    
Predicted Functional Partners:
vcp
Valosin containing protein; Belongs to the AAA ATPase family.
   
 
 0.918
spata5l1
Spermatogenesis associated 5-like 1.
   
 
 0.904
eif6
Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis.
    
   0.823
NEMF
Nuclear export mediator factor.
   
 
 0.735
tcf25
Transcription factor 25 (basic helix-loop-helix).
   
 
 0.673
ufd1
Ubiquitin recognition factor in ER associated degradation 1.
      
 0.667
plaa
Phospholipase A2-activating protein.
    
 
 0.635
katnal2
Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.
    
 
 0.622
ube4a
Ubiquitination factor E4A (UFD2 homolog, yeast).
    
 
 0.605
ube4b
Ubiquitination factor E4B, UFD2 homolog (S. cerevisiae).
    
 
 0.605
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.