STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101169354CHCH domain-containing protein. (151 aa)    
Predicted Functional Partners:
gfer
Sulfhydryl oxidase.
    
 0.946
LOC101170379
Cytochrome c oxidase copper chaperone COX17.
   
 0.938
timm10
Translocase of inner mitochondrial membrane 10 homolog (yeast).
   
 0.857
Timm9
zf-Tim10_DDP domain-containing protein.
   
 0.791
timm13
Translocase of inner mitochondrial membrane 13 homolog (yeast); Belongs to the small Tim family.
   
 0.757
timm8a
Translocase of inner mitochondrial membrane 8 homolog A (yeast); Belongs to the small Tim family.
   
 0.706
atp23
Mitochondrial inner membrane protease ATP23; Belongs to the peptidase M76 family.
    
 
 0.638
micu1
Mitochondrial calcium uptake 1.
    
 
 0.587
timm8b
Translocase of inner mitochondrial membrane 8 homolog B (yeast); Belongs to the small Tim family.
   
 0.563
NFE2L1
Nuclear factor, erythroid 2 like 1.
      
 0.560
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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