STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fam32aFamily with sequence similarity 32 member A. (114 aa)    
Predicted Functional Partners:
cwc22
CWC22 spliceosome associated protein homolog.
    
  0.991
slu7
SLU7 homolog, splicing factor.
   
 0.986
sde2
SDE2 telomere maintenance homolog (S. pombe).
    
 0.947
NKAPL
NFKB activating protein like.
    
 0.920
syf2
SYF2 pre-mRNA-splicing factor.
   
 0.918
cactin
Cactin.
    
 0.895
cdc40
Cell division cycle 40 homolog (S. cerevisiae).
    
 0.861
ppil1
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
    
  0.849
prpf8
Pre-mRNA processing factor 8.
    
   0.830
yju2
YJU2 splicing factor homolog.
   
 
 0.820
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.