STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101167795Tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2a. (1900 aa)    
Predicted Functional Partners:
LOC101171716
Serine/threonine-protein phosphatase.
    
 0.517
PPP6C
Serine/threonine-protein phosphatase.
    
 0.517
ift81
Intraflagellar transport 81 homolog.
    
 0.496
ppp6r2
Protein phosphatase 6, regulatory subunit 2a.
    
 0.488
ppp6r3
Protein phosphatase 6, regulatory subunit 3.
    
 0.488
LOC101175152
Protein phosphatase 6, regulatory subunit 2b.
    
 0.488
ift52
Intraflagellar transport 52 homolog (Chlamydomonas).
    
 0.458
ift88
Intraflagellar transport 88 homolog.
   
 0.458
ift22
Intraflagellar transport 22 homolog (Chlamydomonas).
    
 0.449
REL
REL proto-oncogene, NF-kB subunit.
   
 0.441
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.