STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ttc21bTetratricopeptide repeat domain 21B. (1321 aa)    
Predicted Functional Partners:
wdr35
WD repeat-containing protein 35.
   
 0.993
IFT122
Intraflagellar transport 122.
   
 0.992
IFT43
Uncharacterized protein.
    
 0.992
ift140
Intraflagellar transport 140 homolog (Chlamydomonas).
  
 0.992
Unc79
Uncharacterized protein.
   
 0.991
wdr19
WD repeat domain 19.
   
 0.990
ift74
Intraflagellar transport 74.
   
 0.941
ift81
Intraflagellar transport 81 homolog.
     
 0.937
ift20
Intraflagellar transport 20 homolog (Chlamydomonas).
    
 0.933
ift80
Intraflagellar transport 80 homolog (Chlamydomonas).
   
 0.933
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.