STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H2MR98_ORYLAPlexin_cytopl domain-containing protein. (469 aa)    
Predicted Functional Partners:
H2MRA1_ORYLA
Sema domain-containing protein.
 
      0.898
rnd3
Rho family GTPase 3a.
    
 0.792
LOC101155643
Rho family GTPase 2.
    
 0.708
LOC101158526
Rho family GTPase 2.
    
 0.708
SEMA4D
Semaphorin 4D; Belongs to the semaphorin family.
    
 0.692
LOC101170303
Semaphorin 4e; Belongs to the semaphorin family.
    
 0.692
LOC101161968
Si:ch211-129c21.1; Belongs to the semaphorin family.
    
 0.692
arhgef1
Rho guanine nucleotide exchange factor (GEF) 1b.
    
 0.684
nrp1
Neuropilin; Belongs to the neuropilin family.
    
 0.638
LOC101155173
Sema domain-containing protein.
    
 0.598
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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