STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hoxb2Homeobox B2a. (425 aa)    
Predicted Functional Partners:
LOC101170024
Homeobox B4a.
   
 
 0.611
RFX7
Regulatory factor X7.
      
 0.577
LOC101169786
HoxB5a.
  
 
0.547
pgs1
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; Functions in the biosynthesis of the anionic phospholipids phosphatidylglycerol and cardiolipin; Belongs to the CDP-alcohol phosphatidyltransferase class-II family.
      
 0.536
LOC100301594
Homeobox A4a.
  
  
0.485
hoxb5
Homeobox B5b.
   
 
0.481
LOC110015536
Homeobox B3a.
  
  
0.453
pknox1
Pbx/knotted 1 homeobox 1.1.
   
 0.452
LOC101172525
Pre-B-cell leukemia homeobox 2.
    
 0.445
LOC101175240
Homeobox B13a.
  
 
 
0.434
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.