STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101156710Retinoblastoma binding protein 4, like. (481 aa)    
Predicted Functional Partners:
lin9
Lin-9 DREAM MuvB core complex component.
    
 0.995
lin37
Lin-37 DREAM MuvB core complex component.
    
 0.995
lin54
Lin-54 DREAM MuvB core complex component.
   
 0.992
H2M348_ORYLA
Tudor-knot domain-containing protein.
   
 0.990
arid4b
Translocase of outer mitochondrial membrane 20.
   
 0.990
Arid4a
Tudor domain-containing protein.
   
 0.990
lin52
Lin-52 DREAM MuvB core complex component.
   
 0.989
eed
Embryonic ectoderm development protein.
   
 0.984
hat1
Histone acetyltransferase type B catalytic subunit; Acetylates soluble but not nucleosomal histone H4 at 'Lys-5' (H4K5ac) and 'Lys-12' (H4K12ac) and, to a lesser extent, acetylates histone H2A at 'Lys-5' (H2AK5ac). Has intrinsic substrate specificity that modifies lysine in recognition sequence GXGKXG.
   
 0.972
mybl2
V-myb avian myeloblastosis viral oncogene homolog-like 2b.
   
 0.966
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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