chd5 protein (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

chd5

Uncharacterized protein. (1782 aa)

Predicted Functional Partners:

rbbp4

0.899

LOC101156710

0.899

LOC101167110

0.849

mta3

0.849

gatad2b

0.849

mta1

0.849

mta2

0.849

LOC101173502

0.849

LOC101172482

0.785

LOC101163357

0.784

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC101156710	LOC101163357	ENSORLP00000021495	ENSORLP00000019083	Retinoblastoma binding protein 4, like.	Uncharacterized protein.	0.874
LOC101156710	LOC101167110	ENSORLP00000021495	ENSORLP00000000886	Retinoblastoma binding protein 4, like.	GATA zinc finger domain containing 2Ab.	0.905
LOC101156710	LOC101172482	ENSORLP00000021495	ENSORLP00000026781	Retinoblastoma binding protein 4, like.	Methyl-CpG binding domain protein 3a.	0.883
LOC101156710	LOC101173502	ENSORLP00000021495	ENSORLP00000019344	Retinoblastoma binding protein 4, like.	Uncharacterized protein.	0.905
LOC101156710	chd5	ENSORLP00000021495	ENSORLP00000021515	Retinoblastoma binding protein 4, like.	Uncharacterized protein.	0.899
LOC101156710	gatad2b	ENSORLP00000021495	ENSORLP00000013630	Retinoblastoma binding protein 4, like.	GATA zinc finger domain containing 2B.	0.905
LOC101156710	mta1	ENSORLP00000021495	ENSORLP00000013956	Retinoblastoma binding protein 4, like.	Metastasis associated 1.	0.942
LOC101156710	mta2	ENSORLP00000021495	ENSORLP00000014788	Retinoblastoma binding protein 4, like.	Metastasis associated 1 family, member 2.	0.942
LOC101156710	mta3	ENSORLP00000021495	ENSORLP00000012906	Retinoblastoma binding protein 4, like.	Metastasis associated 1 family, member 3.	0.942
LOC101156710	rbbp4	ENSORLP00000021495	ENSORLP00000021493	Retinoblastoma binding protein 4, like.	Retinoblastoma binding protein 4.	0.900
LOC101163357	LOC101156710	ENSORLP00000019083	ENSORLP00000021495	Uncharacterized protein.	Retinoblastoma binding protein 4, like.	0.874
LOC101163357	LOC101167110	ENSORLP00000019083	ENSORLP00000000886	Uncharacterized protein.	GATA zinc finger domain containing 2Ab.	0.797
LOC101163357	LOC101173502	ENSORLP00000019083	ENSORLP00000019344	Uncharacterized protein.	Uncharacterized protein.	0.797
LOC101163357	chd5	ENSORLP00000019083	ENSORLP00000021515	Uncharacterized protein.	Uncharacterized protein.	0.784
LOC101163357	gatad2b	ENSORLP00000019083	ENSORLP00000013630	Uncharacterized protein.	GATA zinc finger domain containing 2B.	0.797
LOC101163357	mta1	ENSORLP00000019083	ENSORLP00000013956	Uncharacterized protein.	Metastasis associated 1.	0.878
LOC101163357	mta2	ENSORLP00000019083	ENSORLP00000014788	Uncharacterized protein.	Metastasis associated 1 family, member 2.	0.878
LOC101163357	mta3	ENSORLP00000019083	ENSORLP00000012906	Uncharacterized protein.	Metastasis associated 1 family, member 3.	0.878
LOC101163357	rbbp4	ENSORLP00000019083	ENSORLP00000021493	Uncharacterized protein.	Retinoblastoma binding protein 4.	0.874
LOC101167110	LOC101156710	ENSORLP00000000886	ENSORLP00000021495	GATA zinc finger domain containing 2Ab.	Retinoblastoma binding protein 4, like.	0.905