STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TMEM19Transmembrane protein 19. (335 aa)    
Predicted Functional Partners:
slc30a5
Solute carrier family 30 member 5.
   
  
 0.564
enkur
Enkurin, TRPC channel interacting protein.
      
 0.559
nus1
NUS1 dehydrodolichyl diphosphate synthase subunit.
     
 0.543
dhdds
Alkyl transferase; Belongs to the UPP synthase family.
     
 0.543
rab21
RAB21, member RAS oncogene family.
 
    
 0.494
scarf1
Scavenger receptor class F, member 1.
      
 0.487
sergef
Secretion regulating guanine nucleotide exchange factor.
      
 0.483
saal1
Serum amyloid A-like 1.
      
 0.482
H2LM76_ORYLA
Fin bud initiation factor a.
      
 0.480
LOC101174504
RUN domain containing 3Aa.
      
 0.461
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.