STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cwf19l1CWF19 like cell cycle control factor 1. (550 aa)    
Predicted Functional Partners:
cdc5l
CDC5 cell division cycle 5-like (S. pombe).
   
 
 0.946
syf2
SYF2 pre-mRNA-splicing factor.
    
  0.728
xab2
XPA binding protein 2.
    
 0.727
tfip11
Tuftelin-interacting protein 11; Involved in pre-mRNA splicing, specifically in spliceosome disassembly during late-stage splicing events. Belongs to the TFP11/STIP family.
   
 
 0.718
cwf19l2
CWF19 like cell cycle control factor 2.
    
0.718
crnkl1
Crooked neck pre-mRNA splicing factor 1.
   
 
 0.674
isy1
ISY1 splicing factor homolog.
    
 0.615
ccdc12
Coiled-coil domain containing 12.
    
  0.605
sart3
Spliceosome associated factor 3, U4/U6 recycling protein.
   
 
  0.585
myef2
Myelin expression factor 2.
    
  0.582
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.