STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ZNF830Zinc finger protein 830. (324 aa)    
Predicted Functional Partners:
ppie
Peptidyl-prolyl cis-trans isomerase E; Catalyzes the cis-trans isomerization of proline imidic peptide bonds in proteins; Belongs to the cyclophilin-type PPIase family. PPIase E subfamily.
   
 0.972
aqr
Aquarius intron-binding spliceosomal factor.
    
 0.970
snw1
SNW domain containing 1.
    
 0.960
prpf19
Pre-mRNA processing factor 19.
    
 0.957
crnkl1
Crooked neck pre-mRNA splicing factor 1.
   
 
 0.957
xab2
XPA binding protein 2.
    
 0.949
prpf8
Pre-mRNA processing factor 8.
    
   0.911
isy1
ISY1 splicing factor homolog.
    
  0.908
sf3b2
Splicing factor 3b, subunit 2.
    
   0.904
bud31
BUD31 homolog.
     
 0.888
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.