STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpe65Retinoid isomerohydrolase RPE65 a. (571 aa)    
Predicted Functional Partners:
rdh5
Retinol dehydrogenase 5 (11-cis/9-cis); Belongs to the short-chain dehydrogenases/reductases (SDR) family.
   
 
 0.928
rdh10
Retinol dehydrogenase 10a; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
   
 
 0.927
LOC101158747
LRAT domain-containing protein.
     
 0.915
LOC101162811
Lecithin retinol acyltransferase a.
     
 0.915
LOC105356312
Lecithin retinol acyltransferase b, tandem duplicate 1.
     
 0.915
LOC101170667
Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
   
 
 0.907
LOC101172026
Lecithin retinol acyltransferase b, tandem duplicate 2.
   
 
 0.906
LOC101166984
O-acyltransferase.
   
 
 0.903
DGAT1
O-acyltransferase.
   
 
 0.903
LOC101163729
Retinoid isomerohydrolase RPE65 b.
  
  
 
0.901
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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