STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
itga6Integrin subunit alpha 6; Belongs to the integrin alpha chain family. (1078 aa)    
Predicted Functional Partners:
itgb1
Integrin beta; Belongs to the integrin beta chain family.
   
 0.965
LOC101154978
Integrin beta; Belongs to the integrin beta chain family.
   
 0.955
itgb4
Integrin beta.
   
 0.955
LOC101167322
Integrin, alpha 6b; Belongs to the integrin alpha chain family.
  
  
 
0.903
LOC101172910
Integrin_alpha2 domain-containing protein; Belongs to the integrin alpha chain family.
  
  
 
0.902
lamc3
Laminin, gamma 3.
   
 0.868
itgb6
Integrin beta; Belongs to the integrin beta chain family.
   
 0.811
lamb1
Laminin, beta 1a.
    
 0.801
lamb2
Laminin, beta 2 (laminin S).
    
 0.801
lama4
Laminin, alpha 4.
   
 0.798
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.