STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sntg1Syntrophin, gamma 1. (525 aa)    
Predicted Functional Partners:
sntb1
Syntrophin, basic 1.
    
0.720
SNTA1
Syntrophin alpha 1.
    
0.716
sntb2
Syntrophin, beta 2.
    
0.708
LOC101161925
Sarcoglycan, alpha.
   
 
 0.669
sgce
Sarcoglycan, epsilon.
   
 
 0.669
sgcg
Sarcoglycan, gamma.
   
 
 0.661
SGCZ
Sarcoglycan zeta.
   
 
 0.661
LOC101164098
Uncharacterized protein.
   
 
 0.661
sgcd
Sarcoglycan, delta (dystrophin-associated glycoprotein).
   
 
 0.661
dag1
Dystroglycan 1.
     
 0.594
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.