STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
agap3ArfGAP with GTPase domain, ankyrin repeat and PH domain 3. (1314 aa)    
Predicted Functional Partners:
LOC101158221
Glutamate receptor, ionotropic, AMPA 3a.
   
 
 0.694
LOC101163354
Stathmin; Belongs to the stathmin family.
    
 0.692
stmn2
Stathmin; Belongs to the stathmin family.
    
 0.591
baz2a
Bromodomain adjacent to zinc finger domain, 2A.
      
 0.589
LOC101168288
Sodium channel protein; Mediates the voltage-dependent sodium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a sodium-selective channel through which Na(+) ions may pass in accordance with their electrochemical gradient.
    
 
 0.587
LOC101165788
Uncharacterized protein; Belongs to the Ca(2+):cation antiporter (CaCA) (TC 2.A.19) family.
      
 0.567
SLC24A2
Solute carrier family 24 member 2; Belongs to the Ca(2+):cation antiporter (CaCA) (TC 2.A.19) family.
      
 0.567
fosl1
FOS-like antigen 1a.
      
 0.546
tanc1
Tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1b.
    
 0.543
nlgn2-2
Neuroligin 2a.
   
 
 0.520
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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