STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hoxd3Homeobox protein Hox-D3; Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis; Belongs to the Antp homeobox family. (400 aa)    
Predicted Functional Partners:
H2MT59_ORYLA
Homeobox D4a.
 
 
  
 0.961
chd9
Chromodomain helicase DNA binding protein 9.
   
 
 0.531
LOC101175260
Homeobox domain-containing protein.
   
 
0.518
lnpk
Limb and neural patterns a.
      
 0.501
hoxd9
HoxD10a.
   
 
0.499
pbx1
Homeobox domain-containing protein.
    
 0.425
LOC101160104
Pre-B-cell leukemia homeobox 1b.
    
 0.425
LOC101159440
Pre-B-cell leukemia transcription factor 4.
    
 0.425
pbx3
Homeobox domain-containing protein.
    
 0.425
LOC101172525
Pre-B-cell leukemia homeobox 2.
    
 0.425
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.