STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vrtnVertebrae development associated. (705 aa)    
Predicted Functional Partners:
sybu
Syntabulin (syntaxin-interacting).
     
 0.563
tmem192
Transmembrane protein 192.
    
 0.561
abcd4
ATP-binding cassette, sub-family D (ALD), member 4.
      
 0.559
AREL1
Apoptosis resistant E3 ubiquitin protein ligase 1.
      
 0.478
LOC101159122
Transmembrane protein 91.
   
  
 0.410
SYNDIG1L
Synapse differentiation inducing 1 like.
   
  
 0.410
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.