STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
snap47Synaptosome associated protein 47. (423 aa)    
Predicted Functional Partners:
stx18
Syntaxin 18.
    
 0.866
vamp7
Synaptobrevin-like 1; Belongs to the synaptobrevin family.
    
 0.857
vamp4
Vesicle-associated membrane protein 4.
   
 0.855
LOC101171261
Si:ch73-234b20.5.
    
 0.850
LOC105354787
Vesicle-associated membrane protein 8 (endobrevin).
   
 0.846
LOC101173249
Zgc:92912.
   
 0.845
LOC101164413
Vesicle-associated membrane protein 1.
   
 0.845
vamp2
Vesicle-associated membrane protein 2.
   
 0.845
Vamp3
Vesicle-associated membrane protein 3 (cellubrevin).
   
 0.841
stx12
Syntaxin 12; Belongs to the syntaxin family.
   
 0.829
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.