STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101175325Uncharacterized protein. (1052 aa)    
Predicted Functional Partners:
LOC101167985
Si:ch211-1i11.3.
    
 0.921
map3k5
Mitogen-activated protein kinase kinase kinase 5.
    
 0.921
LOC101155367
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
   
 0.916
traf2
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
   
 0.916
LOC101167626
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
   
 0.916
dab2ip
DAB2 interacting protein b.
  
  
 
0.901
ttll11
Tubulin tyrosine ligase-like family, member 11.
      
 0.656
LOC101167092
Uncharacterized protein.
    
 0.651
LOC101162540
RAB14, member RAS oncogene family.
    
 0.648
fbxw2
F-box and WD repeat domain containing 2.
    
 
 0.639
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.