STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gata6GATA binding protein 6. (489 aa)    
Predicted Functional Partners:
nkx2-5
Homeobox domain-containing protein.
   
 0.892
zfpm2
Zinc finger protein, FOG family member 2a.
    
 0.732
lmo2
LIM domain only 2 (rhombotin-like 1).
    
 0.720
zfpm1
Zinc finger protein, FOG family member 1.
   
 0.717
lmcd1
Uncharacterized protein.
    
 0.712
foxa3
Me-FKH1.
   
 0.675
foxa2
Hepatocyte nuclear factor 3-beta; Transcription activator for a number of liver genes. Interacts with the cis-acting regulatory regions of these genes (By similarity).
    
 0.670
sox17
SRY-box containing gene 17.
   
 0.667
hand2
Heart and neural crest derivatives expressed 2.
   
 0.642
nfyb
Nuclear transcription factor Y, beta a.
    
 
 0.621
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.