STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tmem214Transmembrane protein 214. (685 aa)    
Predicted Functional Partners:
sec63
SEC63 homolog, protein translocation regulator.
   
 
 0.716
tmem70
Transmembrane protein 70.
      
 0.578
ckap4
Uncharacterized protein.
    
 
 0.566
rhbdd1
Rhomboid domain containing 1.
      
 0.560
klhl31
Kelch-like family member 31.
      
 0.560
trmt11
tRNA methyltransferase 11 homolog.
      
 0.559
exd2
Exonuclease 3'-5' domain containing 2.
      
 0.559
mogs
Mannosyl-oligosaccharide glucosidase.
   
  
 0.543
sec61a1
Plug_translocon domain-containing protein.
   
  
 0.527
LOC101169601
Plug_translocon domain-containing protein.
   
  
 0.527
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.