STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101167157Protocadherin 8. (965 aa)    
Predicted Functional Partners:
ARHGAP6
Rho GTPase activating protein 6.
      
 0.616
anks3
Ankyrin repeat and sterile alpha motif domain containing 3.
    
 0.608
rhot2
Mitochondrial Rho GTPase; Mitochondrial GTPase involved in mitochondrial trafficking. Belongs to the mitochondrial Rho GTPase family.
    
 0.606
egfl6
EGF-like-domain, multiple 6.
   
 0.606
rhbdl1
Rhomboid-related protein 1; May be involved in regulated intramembrane proteolysis and the subsequent release of functional polypeptides from their membrane anchors; Belongs to the peptidase S54 family.
   
  
 0.604
cog3
Component of oligomeric golgi complex 3.
      
 0.600
wdr24
WD repeat domain 24.
      
 0.597
Wdr90
WD_REPEATS_REGION domain-containing protein.
     
 0.595
gcgr
Glucagon receptor a; Belongs to the G-protein coupled receptor 2 family.
    
 0.550
eapp
E2f-associated phosphoprotein.
      
 0.525
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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