STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101162555Collectin sub-family member 12. (763 aa)    
Predicted Functional Partners:
colec11
Collectin sub-family member 11.
  
 
0.919
COLEC12
Collectin subfamily member 12.
  
 
 
0.910
ENSORLP00000030516
annotation not available
  
 
  0.494
H2MBB3_ORYLA
Vitellogenin domain-containing protein.
    
  0.485
LOC101158990
Apolipoprotein Bb, tandem duplicate 2.
    
  0.485
LOC101156458
Apolipoprotein Ba.
    
  0.485
ENSORLP00000032656
Uncharacterized protein.
   
 0.472
ENSORLP00000028880
Uncharacterized protein.
  
     0.461
ENSORLP00000036829
Uncharacterized protein.
  
     0.461
ENSORLP00000027031
Uncharacterized protein.
  
 
  0.456
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.