STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101164255Si:ch211-106h4.9. (1145 aa)    
Predicted Functional Partners:
LOC101172416
Uncharacterized protein.
    
 0.611
rab27a
RAB27A, member RAS oncogene family.
    
 0.611
rab27b
RAB27B, member RAS oncogene family.
    
 0.611
exoc4
Exocyst complex component 4.
      
 0.558
gmip
GEM interacting protein.
      
 0.483
bicc1
BicC family RNA binding protein 1a.
      
 0.448
LOC101172590
Bicaudal C homolog 2.
      
 0.448
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.