LOC101155314 protein (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC101155314

AHA1, activator of heat shock protein ATPase homolog 1b. (342 aa)

Predicted Functional Partners:

stip1

0.934

LOC101169506

0.838

hsp90ab1

0.838

hsp90b1

0.824

nktr

0.811

PPIG

0.811

ppid

0.811

trap1

0.785

tsc1

0.785

ENSORLP00000031311

0.785

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSORLP00000031311	LOC101155314	ENSORLP00000031311	ENSORLP00000022466	Uncharacterized protein.	AHA1, activator of heat shock protein ATPase homolog 1b.	0.785
ENSORLP00000031311	PPIG	ENSORLP00000031311	ENSORLP00000021486	Uncharacterized protein.	Peptidylprolyl isomerase G.	0.831
ENSORLP00000031311	nktr	ENSORLP00000031311	ENSORLP00000011770	Uncharacterized protein.	Natural killer cell triggering receptor.	0.831
ENSORLP00000031311	ppid	ENSORLP00000031311	ENSORLP00000037163	Uncharacterized protein.	Peptidylprolyl isomerase D.	0.831
ENSORLP00000031311	stip1	ENSORLP00000031311	ENSORLP00000013613	Uncharacterized protein.	Stress-induced phosphoprotein 1.	0.949
ENSORLP00000031311	tsc1	ENSORLP00000031311	ENSORLP00000018027	Uncharacterized protein.	TSC complex subunit 1b.	0.545
LOC101155314	ENSORLP00000031311	ENSORLP00000022466	ENSORLP00000031311	AHA1, activator of heat shock protein ATPase homolog 1b.	Uncharacterized protein.	0.785
LOC101155314	LOC101169506	ENSORLP00000022466	ENSORLP00000014900	AHA1, activator of heat shock protein ATPase homolog 1b.	Heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 2.	0.838
LOC101155314	PPIG	ENSORLP00000022466	ENSORLP00000021486	AHA1, activator of heat shock protein ATPase homolog 1b.	Peptidylprolyl isomerase G.	0.811
LOC101155314	hsp90ab1	ENSORLP00000022466	ENSORLP00000033219	AHA1, activator of heat shock protein ATPase homolog 1b.	Heat shock protein 90, alpha (cytosolic), class B member 1.	0.838
LOC101155314	hsp90b1	ENSORLP00000022466	ENSORLP00000005467	AHA1, activator of heat shock protein ATPase homolog 1b.	Heat shock protein 90, beta (grp94), member 1.	0.824
LOC101155314	nktr	ENSORLP00000022466	ENSORLP00000011770	AHA1, activator of heat shock protein ATPase homolog 1b.	Natural killer cell triggering receptor.	0.811
LOC101155314	ppid	ENSORLP00000022466	ENSORLP00000037163	AHA1, activator of heat shock protein ATPase homolog 1b.	Peptidylprolyl isomerase D.	0.811
LOC101155314	stip1	ENSORLP00000022466	ENSORLP00000013613	AHA1, activator of heat shock protein ATPase homolog 1b.	Stress-induced phosphoprotein 1.	0.934
LOC101155314	trap1	ENSORLP00000022466	ENSORLP00000010499	AHA1, activator of heat shock protein ATPase homolog 1b.	TNF receptor-associated protein 1.	0.785
LOC101155314	tsc1	ENSORLP00000022466	ENSORLP00000018027	AHA1, activator of heat shock protein ATPase homolog 1b.	TSC complex subunit 1b.	0.785
LOC101169506	LOC101155314	ENSORLP00000014900	ENSORLP00000022466	Heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 2.	AHA1, activator of heat shock protein ATPase homolog 1b.	0.838
LOC101169506	PPIG	ENSORLP00000014900	ENSORLP00000021486	Heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 2.	Peptidylprolyl isomerase G.	0.831
LOC101169506	hsp90ab1	ENSORLP00000014900	ENSORLP00000033219	Heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 2.	Heat shock protein 90, alpha (cytosolic), class B member 1.	0.946
LOC101169506	hsp90b1	ENSORLP00000014900	ENSORLP00000005467	Heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 2.	Heat shock protein 90, beta (grp94), member 1.	0.929