STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
jade1Jade family PHD finger 1. (886 aa)    
Predicted Functional Partners:
meaf6
MYST/Esa1-associated factor 6.
    
 0.834
ing4
Inhibitor of growth protein.
    
 0.705
ing5
Inhibitor of growth protein.
    
 0.656
pacc1
Proton activated chloride channel 1.
      
 0.656
sfmbt2
Scm like with four mbt domains 2.
      
 0.648
LOC101164766
La ribonucleoprotein domain family, member 1B.
      
 0.643
nenf
Neudesin neurotrophic factor; Belongs to the cytochrome b5 family.
      
 0.604
camkk1
Calcium/calmodulin-dependent protein kinase kinase 1, alpha a.
   
  
 0.599
LOC101155734
Acetylserotonin O-methyltransferase 2.
      
 0.547
ctr9
CTR9 homolog, Paf1/RNA polymerase II complex component.
      
 0.535
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.