STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ccn2Cellular communication network factor 2a. (346 aa)    
Predicted Functional Partners:
dcn
Decorin; May affect the rate of fibrils formation.
   
  
 0.582
LOC101157631
Transforming growth factor beta; Belongs to the TGF-beta family.
   
  
 0.561
LOC101158485
NME/NM23 nucleoside diphosphate kinase 2a; Belongs to the NDK family.
   
  
 0.544
TEAD1
TEA domain family member 1b.
     
 0.510
ankrd1
Ankyrin repeat domain 1a (cardiac muscle).
    
 
 0.502
mmp9
Uncharacterized protein.
    
 
 0.472
AXL
AXL receptor tyrosine kinase.
   
  
 0.455
lats1
Large tumor suppressor kinase 1.
      
 0.450
amotl2
Angiomotin like 2a.
      
 0.439
LOC101156666
Uncharacterized protein.
    
 
 0.402
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.