STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
chgaUncharacterized protein. (315 aa)    
Predicted Functional Partners:
scg3
Secretogranin III.
   
  
 0.711
LOC101157910
Somatostatin.
   
  
 0.639
LOC101157631
Transforming growth factor beta; Belongs to the TGF-beta family.
      
 0.630
LOC101155694
Peptide YYa.
   
  
 0.570
cd79a
CD79a molecule, immunoglobulin-associated alpha.
      
 0.562
LOC101170656
Si:ch211-194m7.4.
      
 0.559
cpe
Carboxypeptidase E.
      
 0.558
scg2
Uncharacterized protein.
   
 
 0.543
LOC101172108
Secretogranin II (chromogranin C), b.
   
 
 0.543
nkx6-1
NK6 homeobox 1.
      
 0.520
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.