STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101169325Uncharacterized protein; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. (327 aa)    
Predicted Functional Partners:
rpl17
Ribosomal protein L17; Belongs to the universal ribosomal protein uL22 family.
 
      0.817
LOC101173617
Malate synthase-like.
  
 
 0.757
LOC101168042
Branched-chain-amino-acid aminotransferase; Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.
    
 0.710
gldc
Glycine cleavage system P protein; The glycine cleavage system catalyzes the degradation of glycine.
   
 
 0.696
LOC101157325
Alanine--glyoxylate and serine--pyruvate aminotransferase b.
  
 
 0.683
LOC101174079
Alanine--glyoxylate and serine--pyruvate aminotransferase a.
  
 
 0.683
LOC101167730
Glyceraldehyde-3-phosphate dehydrogenase.
  
 
 0.680
gapdh
Glyceraldehyde-3-phosphate dehydrogenase.
  
 
 0.680
glyctk
Glycerate kinase.
 
 
 0.665
Psat1
Phosphoserine aminotransferase 1.
     
 0.664
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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