STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
wdr43WD repeat domain 43. (646 aa)    
Predicted Functional Partners:
LOC101167684
PWP2 small subunit processome component.
   
 0.999
utp15
UTP15 small subunit processome component.
  
 0.999
nop58
NOP58 ribonucleoprotein homolog (yeast).
   
 0.999
mphosph10
U3 small nucleolar ribonucleoprotein protein MPP10; Component of the 60-80S U3 small nucleolar ribonucleoprotein (U3 snoRNP). Required for the early cleavages during pre-18S ribosomal RNA processing; Belongs to the MPP10 family.
   
 0.999
wdr46
WD repeat domain 46.
   
 0.999
utp4
UTP4 small subunit processome component.
   
 0.999
wdr75
WD repeat domain 75.
   
 0.999
utp18
WD_REPEATS_REGION domain-containing protein.
   
 0.999
wdr36
WD repeat domain 36.
   
 0.999
bms1
BMS1 ribosome biogenesis factor.
   
 0.999
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.