STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
kcnd1Potassium voltage-gated channel, Shal-related subfamily, member 1; Belongs to the potassium channel family. (656 aa)    
Predicted Functional Partners:
fau
40S ribosomal protein S30.
   
 0.914
rpl31
Ribosomal protein L31.
   
 0.727
rpl23a
Ribosomal protein L23a; Belongs to the universal ribosomal protein uL23 family.
   
 0.726
Rpl35
Ribosomal protein L35.
   
 0.723
rpl29
60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family.
   
 0.723
rpl30
Ribosomal protein L30.
   
 0.722
Rpl35a
Ribosomal protein L35a.
   
 0.718
rpl24
Ribosomal protein L24.
   
 0.717
rpl32
Ribosomal protein L32.
   
 0.715
LOC101170669
Ribosomal protein, large P2; Belongs to the eukaryotic ribosomal protein P1/P2 family.
   
 0.705
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.