STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
jmjd6Jumonji domain containing 6, arginine demethylase and lysine hydroxylase. (401 aa)    
Predicted Functional Partners:
u2af2
U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.
    
 
 0.649
elmod2
ELMO/CED-12 domain containing 2.
      
 0.564
sh3bp4
SH3-domain binding protein 4.
      
 0.564
kdm8
Lysine (K)-specific demethylase 8.
      
 0.560
gulp1
GULP PTB domain containing engulfment adaptor 1a.
      
 0.558
LOC101158947
Bromodomain containing 4.
    
 
 0.546
LOC101159647
Uncharacterized protein.
    
 
 0.546
LOC101155101
Bromodomain, testis-specific.
    
 
 0.546
LOC101159110
Uncharacterized protein.
    
 
 0.546
LOC101162475
Uncharacterized protein.
    
 
 0.546
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.