STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpl7l1Ribosomal protein L7-like 1. (247 aa)    
Predicted Functional Partners:
fau
40S ribosomal protein S30.
   
 0.999
rpl23a
Ribosomal protein L23a; Belongs to the universal ribosomal protein uL23 family.
  
 0.995
Rpl35
Ribosomal protein L35.
  
 0.995
rpl32
Ribosomal protein L32.
  
 0.995
rpl9
Ribosomal protein L9.
  
 0.994
rpl4
Ribosomal protein L4.
  
 0.994
rpl30
Ribosomal protein L30.
   
 0.994
rpl23
Ribosomal protein L23; Belongs to the universal ribosomal protein uL14 family.
  
 0.994
rplp0
60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.
  
 0.994
rpl11
Ribosomal protein L11; Belongs to the universal ribosomal protein uL5 family.
  
 0.994
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.