STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cfap58Cilia and flagella associated protein 58. (855 aa)    
Predicted Functional Partners:
CFAP61
Cilia and flagella associated protein 61.
   
  
 0.607
IQCA1L
IQ motif containing with AAA domain 1.
   
  
 0.561
cfap70
Uncharacterized protein.
      
 0.560
cfap43
Cilia and flagella associated protein 43.
      
 0.558
maats1
MYCBP-associated, testis expressed 1.
   
 0.501
birc6
Baculoviral IAP repeat containing 6.
   
 
  0.468
Birc6
UBIQUITIN_CONJUGAT_2 domain-containing protein.
   
 
  0.468
armc2
Armadillo repeat containing 2.
      
 0.457
ikbkb
Inhibitor of nuclear factor kappa B kinase subunit beta.
    
 0.441
LOC101171857
Component of inhibitor of nuclear factor kappa B kinase complex.
    
 0.441
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.