H2MWR2_ORYLA protein (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

H2MWR2_ORYLA

Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family. (238 aa)

Predicted Functional Partners:

LOC101161080

0.830

LOC101162421

0.830

LOC101173484

0.830

rab6b

0.802

RAB41

0.802

LOC101156359

0.802

rab6a

0.802

armc5

0.795

H2LPR1_ORYLA

0.795

H2LQH7_ORYLA

0.795

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H2LPR1_ORYLA	H2LQH7_ORYLA	ENSORLP00000008046	ENSORLP00000008319	RAB9B, member RAS oncogene family.	RAB9A, member RAS oncogene family.	0.906
H2LPR1_ORYLA	H2MWR2_ORYLA	ENSORLP00000008046	ENSORLP00000023318	RAB9B, member RAS oncogene family.	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	0.795
H2LPR1_ORYLA	LOC101156359	ENSORLP00000008046	ENSORLP00000044668	RAB9B, member RAS oncogene family.	RAB6B, member RAS oncogene family.	0.484
H2LPR1_ORYLA	RAB41	ENSORLP00000008046	ENSORLP00000036989	RAB9B, member RAS oncogene family.	Uncharacterized protein.	0.484
H2LPR1_ORYLA	rab6a	ENSORLP00000008046	ENSORLP00000044902	RAB9B, member RAS oncogene family.	RAB6A, member RAS oncogene family.	0.482
H2LPR1_ORYLA	rab6b	ENSORLP00000008046	ENSORLP00000034791	RAB9B, member RAS oncogene family.	Uncharacterized protein.	0.484
H2LQH7_ORYLA	H2LPR1_ORYLA	ENSORLP00000008319	ENSORLP00000008046	RAB9A, member RAS oncogene family.	RAB9B, member RAS oncogene family.	0.906
H2LQH7_ORYLA	H2MWR2_ORYLA	ENSORLP00000008319	ENSORLP00000023318	RAB9A, member RAS oncogene family.	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	0.795
H2LQH7_ORYLA	LOC101156359	ENSORLP00000008319	ENSORLP00000044668	RAB9A, member RAS oncogene family.	RAB6B, member RAS oncogene family.	0.488
H2LQH7_ORYLA	RAB41	ENSORLP00000008319	ENSORLP00000036989	RAB9A, member RAS oncogene family.	Uncharacterized protein.	0.487
H2LQH7_ORYLA	rab6a	ENSORLP00000008319	ENSORLP00000044902	RAB9A, member RAS oncogene family.	RAB6A, member RAS oncogene family.	0.486
H2LQH7_ORYLA	rab6b	ENSORLP00000008319	ENSORLP00000034791	RAB9A, member RAS oncogene family.	Uncharacterized protein.	0.487
H2MWR2_ORYLA	H2LPR1_ORYLA	ENSORLP00000023318	ENSORLP00000008046	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	RAB9B, member RAS oncogene family.	0.795
H2MWR2_ORYLA	H2LQH7_ORYLA	ENSORLP00000023318	ENSORLP00000008319	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	RAB9A, member RAS oncogene family.	0.795
H2MWR2_ORYLA	LOC101156359	ENSORLP00000023318	ENSORLP00000044668	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	RAB6B, member RAS oncogene family.	0.802
H2MWR2_ORYLA	LOC101161080	ENSORLP00000023318	ENSORLP00000029236	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	Uncharacterized protein.	0.830
H2MWR2_ORYLA	LOC101162421	ENSORLP00000023318	ENSORLP00000038487	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	RAB1A, member RAS oncogene family a.	0.830
H2MWR2_ORYLA	LOC101173484	ENSORLP00000023318	ENSORLP00000044844	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	Zgc:171927.	0.830
H2MWR2_ORYLA	RAB41	ENSORLP00000023318	ENSORLP00000036989	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	Uncharacterized protein.	0.802
H2MWR2_ORYLA	armc5	ENSORLP00000023318	ENSORLP00000002620	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	Armadillo repeat containing 5.	0.795

page 1 of 4

Server load: low (22%) [HD]

Permalink

Network

Cooccurrence

Experiments

Coexpression

Databases

Neighborhood

Textmining

Fusion

© STRING Consortium 2024

Credits

Access

Info

About