STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ska1Spindle and kinetochore associated complex subunit 1. (249 aa)    
Predicted Functional Partners:
ska3
Spindle and kinetochore associated complex subunit 3.
   
 0.995
ska2
SKA2 domain-containing protein.
   
 0.994
ndc80
NDC80 kinetochore complex component.
   
 
 0.905
espl1
Extra spindle pole bodies like 1, separase.
   
 
 0.895
kif11
Kinesin family member 11; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.
   
  
 0.850
bub1
BUB1 mitotic checkpoint serine/threonine kinase.
   
 
 0.835
nuf2
UF2 component of NDC80 kinetochore complex.
   
  
 0.824
cdc20
WD_REPEATS_REGION domain-containing protein.
   
 
 0.782
cdc20b
WD_REPEATS_REGION domain-containing protein.
   
 
 0.782
spc24
SPC24 component of NDC80 kinetochore complex.
   
 
 0.782
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.