STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101172961Serine/threonine kinase 35; Belongs to the protein kinase superfamily. (411 aa)    
Predicted Functional Partners:
becn1
Beclin 1.
    
 0.864
pik3c3
Phosphatidylinositol 3-kinase catalytic subunit type 3.
    
 0.860
pik3r4
Phosphoinositide-3-kinase, regulatory subunit 4.
    
 0.860
atg13
Autophagy-related protein 13; Belongs to the ATG13 family. Metazoan subfamily.
   
 0.842
rb1cc1
RB1-inducible coiled-coil 1.
    
 0.836
atg101
Autophagy related 101.
    
 0.817
atg14
Autophagy related 14.
    
 0.768
atg3
Autophagy-related protein 3.
   
 
 0.753
atg16l2
WD_REPEATS_REGION domain-containing protein.
    
 
 0.743
atg12
Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family.
    
 
 0.740
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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