STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tnfaip6Tumor necrosis factor, alpha-induced protein 6. (256 aa)    
Predicted Functional Partners:
ptx3
Pentraxin 3, long b.
   
 
 0.900
LOC101162901
Interleukin-8; Belongs to the intercrine alpha (chemokine CxC) family.
   
 
 0.777
LOC101159348
Link domain-containing protein.
     
0.745
nfkb1
Nuclear factor of kappa light polypeptide gene enhancer in B-cells 1.
   
 0.698
LOC101169209
Uncharacterized protein.
   
 0.679
LOC101166137
EGF-like domain-containing protein.
      
 0.647
LOC101172593
Tumor necrosis factor a (TNF superfamily, member 2).
   
 
 0.607
has2
Hyaluronan synthase 2.
   
  
 0.594
habp2
Uncharacterized protein.
    
 0.564
fnta
Farnesyltransferase, CAAX box, alpha.
      
 0.560
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.