STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101172303Nucleosome assembly protein 1-like 4b; Belongs to the nucleosome assembly protein (NAP) family. (355 aa)    
Predicted Functional Partners:
LOC101172846
Histone H2A; Belongs to the histone H2A family.
   
 
 0.824
LOC101170644
H2A histone family, member Va; Belongs to the histone H2A family.
   
 
 0.824
ipo9
Importin 9.
   
 
 0.821
rps6
Ribosomal protein S6.
   
 
 0.809
rpl39
Ribosomal protein L39.
   
 
 0.730
commd1
Copper metabolism (Murr1) domain containing 1.
      
 0.632
nap1l1
Nucleosome assembly protein 1-like 1; Belongs to the nucleosome assembly protein (NAP) family.
  
 
0.618
UBE2O
Ubiquitin conjugating enzyme E2 O.
    
 
 0.598
LOC101155571
Histone H2B; Belongs to the histone H2B family.
    
 
 0.593
LOC101155571-2
Histone H2B 1/2.
    
 
 0.593
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.