STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101157105Zgc:136872; Belongs to the peptidase C2 family. (699 aa)    
Predicted Functional Partners:
LOC101168213
BCL2 associated X, apoptosis regulator a.
   
 
 0.903
LOC101168687
Zgc:153993.
   
 
 0.901
cast
Uncharacterized protein.
   
 0.810
capns1
Calpain, small subunit 1 b.
   
0.591
LOC101165329
Uncharacterized protein.
   
0.591
ptpn1
Tyrosine-protein phosphatase non-receptor type.
    
 
 0.533
H2L406_ORYLA
Mitogen-activated protein kinase.
   
 
 0.527
itm2b
Integral membrane protein 2Bb.
   
 
 0.523
sesn1
Sestrin 1.
   
  
 0.510
copa
Coatomer subunit alpha; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network.
      
 0.504
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.