STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Smg1SMG1_N domain-containing protein. (764 aa)    
Predicted Functional Partners:
UPF1
UPF1 RNA helicase and ATPase.
   
 0.994
smg7
SMG7 nonsense mediated mRNA decay factor.
   
 0.968
smg9
SMG9 nonsense mediated mRNA decay factor.
    
 0.967
smg8
SMG8 nonsense mediated mRNA decay factor.
   
 0.967
H2MY57_ORYLA
FATC domain-containing protein.
 
     0.934
UPF2
UPF2 regulator of nonsense mediated mRNA decay.
   
 
 0.927
rictor
RPTOR independent companion of MTOR, complex 2 a.
   
 0.916
rptor
Regulatory associated protein of MTOR, complex 1.
   
 0.913
etf1
Eukaryotic translation termination factor 1b.
    
 
 0.910
mlst8
MTOR associated protein, LST8 homolog (S. cerevisiae).
    
 0.907
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.