STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tbc1d25TBC1 domain family, member 25. (841 aa)    
Predicted Functional Partners:
LOC101168379
RAB33B, member RAS oncogene family a.
     
 0.798
LOC101168456
GABA(A) receptor-associated protein like 2.
   
 0.752
GABARAPL2
GABA type A receptor associated protein like 2.
   
 0.752
gabarap
GABA(A) receptor-associated protein b.
   
 0.752
map1lc3a
Microtubule-associated protein 1 light chain 3 alpha.
   
 0.727
map1lc3b
RNA-dependent DNA polymerase.
   
 0.727
LOC101158035
RAB33A, member RAS oncogene family.
     
 0.725
LOC101162878
Zgc:101559.
     
 0.670
armc5
Armadillo repeat containing 5.
   
 0.616
H2LPR1_ORYLA
RAB9B, member RAS oncogene family.
   
 0.616
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.