STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rep15Sb:cb470. (280 aa)    
Predicted Functional Partners:
ppfia2
PTPRF interacting protein alpha 2.
   
 0.504
PPFIA3
PTPRF interacting protein alpha 3.
   
 0.504
LOC101169031
PTPRF interacting protein alpha 4.
   
 0.504
LOC101157361
Kazrin, periplakin interacting protein b.
   
 0.504
LOC101157600
PTPRF interacting protein alpha 1.
   
 0.504
LOC101168785
PTPRF interacting protein alpha 3.
   
 0.504
KAZN
Kazrin, periplakin interacting protein a.
   
 0.504
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.