STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101168689Uncharacterized protein; Belongs to the tropomyosin family. (249 aa)    
Predicted Functional Partners:
LOC101158987
Uncharacterized protein.
   
 0.960
LOC105354378
Troponin T type 2a (cardiac).
   
 0.960
ACTA1
Actin alpha 1, skeletal muscle.
   
 0.949
acta1
Actin, alpha skeletal muscle, intermediate form; Actins are highly conserved proteins that are involved in various types of cell motility and are ubiquitously expressed in all eukaryotic cells.
   
 0.949
LOC101167500
Myosin, light chain 1, alkali; skeletal, fast.
   
 0.836
LOC101156569
Troponin I type 1b (skeletal, slow).
   
 0.653
H2LWG8_ORYLA
Troponin I type 1a (skeletal, slow).
   
 0.653
mylpf
Myosin light chain, phosphorylatable, fast skeletal muscle a.
   
 0.653
LOC101155425
Troponin I type 2a (skeletal, fast), tandem duplicate 1.
   
 0.633
TNNI2
Troponin I2, fast skeletal type.
   
 0.633
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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