STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
slc31a1Solute carrier family 31 member 1. (189 aa)    
Predicted Functional Partners:
slc39a8
Solute carrier family 39 member 8.
   
  
 0.591
LOC101170379
Cytochrome c oxidase copper chaperone COX17.
   
  
 0.571
atox1
Antioxidant 1 copper chaperone.
      
 0.560
ccs
Copper chaperone for superoxide dismutase.
    
 
 0.535
slc33a1
Solute carrier family 33 member 1.
      
 0.517
slc3a2
Solute carrier family 3 member 2a.
   
  
 0.507
slc25a28
Solute carrier family 25 member 28; Belongs to the mitochondrial carrier (TC 2.A.29) family.
      
 0.507
SLC25A28
Solute carrier family 25 member 28; Belongs to the mitochondrial carrier (TC 2.A.29) family.
      
 0.507
slc27a4
Solute carrier family 27 member 4.
      
 0.504
LOC101155346
Ferritin; Stores iron in a soluble, non-toxic, readily available form. Important for iron homeostasis. Iron is taken up in the ferrous form and deposited as ferric hydroxides after oxidation.
      
 0.501
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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